About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021090.1_3716_3805_F


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
3716 - 3805

Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACG|GTGAGCGTG

5'SS Class:
major

3'SS Sequence:
TTTTTCCTTGCAG|C

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TCCTGAC

U12 Branch Point Sequence:
CGTTCCTGACCT

Flanking Amino Acid:
LYMMDHENPHAEEQEYSLPQ

Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.6
0.6
1
63.5
42.9

Major BPS
68.9
0.47
1
59.2
39.1

Major PPT
93.6
0.98
0.6
89.1
19.8

Minor 5ss
35
-1.7
3.5
47.2
48.2

Minor BPS
60.6
0.41
1.8
77.65
44.4

Associated Gene:

Gene:
WDR24

Ensembl Gene ID:

Chromosome:
PEDO01021090.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 5150
5130

21 - 5150
5130