About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021096.1_5336_5442_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5336 - 5442
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGGGAG
5'SS Class:
major
3'SS Sequence:
TTTTGGCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCAAAA
U12 Branch Point Sequence:
TTTTGGCTCACA
Flanking Amino Acid:
DTDPEFIEPVGIQKNVQALY
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
61.8
38.6
Major BPS
47.7
-0.1
1
51
32
Major PPT
79
0.65
0.9
72.5
37.8
Minor 5ss
23.3
-3.1
3.2
25.1
38.6
Minor BPS
41.9
-0.6
2.9
67.55
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028363
Chromosome:
PEDO01021096.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046462
4445 - 5681
1237