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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021107.1_10884_11002_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10884 - 11002
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCCCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAACAC
U12 Branch Point Sequence:
GGCCGCCAAACA
Flanking Amino Acid:
SITCPIIVPFGLLYMLLKHM
Intron Amino Acid Position:
642

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
46.4
-0.2
1
50.7
32.2
Major PPT
69.9
0.45
1
62.7
39.7
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
39.4
-0.8
2.2
47.02
42.3

Associated Gene:

Gene:
TMEM63C
Ensembl Gene ID:
ENSAPLG00000013211
Chromosome:
PEDO01021107.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039652
1986 - 11567
9582
ENSAPLT00000013811
1986 - 11567
9582