Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021117.1_1053_2729_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1053 - 2729

Intron Length:

1677

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGTGGG

5'SS Class:

major

3'SS Sequence:

TCCTCTCGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CCCTTTTTAATC

Flanking Amino Acid:

ACVDALKRGDWTPLMMACTR

Intron Amino Acid Position:

105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.1

59.8

45.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

73.9

0.54

0.8

31.9

Minor 5ss

30.8

-2.2

3.4

36.8

42.9

Minor BPS

61.6

0.34

1.3

60.33

40.5

Associated Gene:

Gene:

ANKRD16

Ensembl Gene ID:

ENSAPLG00000031120

Chromosome:

PEDO01021117.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021178

21 - 4009

3989

ENSAPLT00000018159

21 - 4526

4506