Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021118.1_372_606_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

372 - 606

Intron Length:

235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

TCCCCCCGAGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

GATTTCTCATCG

Flanking Amino Acid:

YQVFFFGTHETAFLGPKDLF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.3

63.1

43.4

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

62.7

0.29

58.3

31.6

Minor 5ss

-2.5

30.4

36.1

Minor BPS

49.4

-0.1

1.9

57.5

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018123

Chromosome:

PEDO01021118.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043971

197 - 1401

1205