Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021126.1_562_654_F

Intron Information:

Intron Rank:

146780

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

562 - 654

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-TC

5'SS Sequence:

AGG|GCGGCTGGG

5'SS Class:

weak_major

3'SS Sequence:

CGCGCGCTCGCTC|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTCCC

U12 Branch Point Sequence:

CTCCCCCGCGCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.14

1.3

51.2

42.8

Major BPS

27.7

-1.4

4.1

41.8

Major PPT

19.3

-1.7

37.6

34.6

Minor 5ss

-3.5

3.9

21.9

37.8

Minor BPS

30.1

-1.4

3.5

54.94

46.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029066

Chromosome:

PEDO01021126.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035980

21 - 1150

1130

ENSAPLT00000021116

21 - 732

712