Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021139.1_3132_3455_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3132 - 3455

Intron Length:

324

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGATG

5'SS Class:

strong_major

3'SS Sequence:

CCTGCCATTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGCCAT

U12 Branch Point Sequence:

TCTCCTGCCATT

Flanking Amino Acid:

VVVFFTVIVQGLTIKPLVTW

Intron Amino Acid Position:

432

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.8

78.6

37.3

Major BPS

49.9

-0

1.4

61.8

44.5

Major PPT

72.4

0.51

0.9

62.1

38.6

Minor 5ss

30.4

-2.2

3.2

38.7

46.6

Minor BPS

40.2

-0.6

2.4

60.73

43.9

Associated Gene:

Gene:

SLC9A5

Ensembl Gene ID:

ENSAPLG00000007747

Chromosome:

PEDO01021139.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008070

21 - 10439

10419