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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021139.1_4541_4760_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4541 - 4760
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
GCGTTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGACAT
U12 Branch Point Sequence:
ACATCCCCAAAG
Flanking Amino Acid:
ESLLNDAVTVVLYKVFNSFV
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
73.3
0.52
0.9
66.1
35.9
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
45
-0.5
2
49.51
43.5

Associated Gene:

Gene:
SLC9A5
Ensembl Gene ID:
ENSAPLG00000007747
Chromosome:
PEDO01021139.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008070
21 - 10439
10419