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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021142.1_464_1638_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
464 - 1638
Intron Length:
1175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CATAAATCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTAACGTAACT
Flanking Amino Acid:
SWRNTSWPSKGPARSDHLGS
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
64.2
0.32
1
59
41.3
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
59.5
0.38
2.2
85.99
39.7

Associated Gene:

Gene:
MCL1
Ensembl Gene ID:
ENSAPLG00000016783
Chromosome:
PEDO01021142.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018847
21 - 4623
4603