Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021154.1_1876_2075_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1876 - 2075

Intron Length:

200

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

CTGTGCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

GGGTGCTGAGGC

Flanking Amino Acid:

DDPLQFHFTKEPLMEEYSIA

Intron Amino Acid Position:

657

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

0.8

83.9

30.3

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

68.2

0.41

0.9

58.4

38.4

Minor 5ss

44.3

-0.6

3.1

64.1

47.4

Minor BPS

-0.8

2.1

44.7

43.1

Associated Gene:

Gene:

AMPD2

Ensembl Gene ID:

ENSAPLG00000003828

Chromosome:

PEDO01021154.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037665

1458 - 7185

5728

ENSAPLT00000023105

1458 - 7185

5728

ENSAPLT00000003927

1458 - 7185

5728