About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021158.1_1540_1787_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1540 - 1787
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTATTTATCC
Flanking Amino Acid:
MAGMSWQRRRQRAKRMARAR
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.4
0.59
0.9
73
31.8
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
59.4
0.27
1.8
72.09
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018332
Chromosome:
PEDO01021158.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020242
970 - 3294
2325