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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021158.1_1907_1996_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1907 - 1996
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGGAAA
5'SS Class:
major
3'SS Sequence:
TCTCCCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTCCCTCCACA
Flanking Amino Acid:
NMKLSLNYTVEEAPTWMSYT
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.5
39.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78
0.63
0.7
72.1
26.1
Minor 5ss
37.2
-1.4
3
39.3
46.4
Minor BPS
53.8
0.11
2
69.11
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018332
Chromosome:
PEDO01021158.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041504
970 - 3294
2325
ENSAPLT00000020242
970 - 3294
2325