Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021171.1_2627_3534_R

Intron Information:

Intron Rank:

134823

Intron Class:

major

Intron Phase:

Intron Coordinates:

2627 - 3534

Intron Length:

908

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATCCC

5'SS Class:

strong_major

3'SS Sequence:

CATTTTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAA

U12 Branch Point Sequence:

TGTTCCTCATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

72.1

37.7

Major BPS

85.7

0.89

0.8

85.9

22.5

Major PPT

85.9

0.81

0.7

30.7

Minor 5ss

34.8

-1.7

2.9

45.4

42.6

Minor BPS

62.2

0.46

1.8

81.22

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019866

Chromosome:

PEDO01021171.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041885

2104 - 4311

2208

ENSAPLT00000040266

2104 - 4311

2208