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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021171.1_3607_4249_R

Intron Information:

Intron Rank:
134825
Intron Class:
major
Intron Phase:
Intron Coordinates:
3607 - 4249
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GAATTATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.7
0.53
1
66.5
43.7
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
64.8
0.54
1.7
85.72
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019866
Chromosome:
PEDO01021171.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041885
2104 - 4311
2208