Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021174.1_335_391_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

335 - 391

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCC|GTGGGCCTT

5'SS Class:

weak_major

3'SS Sequence:

ACCCACAGCTGAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCTTCAT

U12 Branch Point Sequence:

TTCCCCTTCATC

Flanking Amino Acid:

QRKGGVDAVSCHLPPSSQIY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.2

0.01

1.4

50.9

47.3

Major BPS

0.62

1.1

77.2

Major PPT

43.4

-0.3

1.6

36.4

Minor 5ss

38.8

-1.3

3.6

60.1

44.9

Minor BPS

0.36

1.8

71.44

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013556

Chromosome:

PEDO01021174.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014131

272 - 2636

2365