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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021189.1_1308_1409_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1308 - 1409
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTCCATT
Flanking Amino Acid:
LFFALHVCDEVNVFGFGADS
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.4
0.5
0.8
65.6
30.3
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
48.8
-0
2.1
76.82
40.3

Associated Gene:

Gene:
ST3GAL2
Ensembl Gene ID:
ENSAPLG00000020142
Chromosome:
PEDO01021189.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035034
172 - 1583
1412