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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021190.1_5990_10897_F

Intron Information:

Intron Rank:
147869
Intron Class:
major
Intron Phase:
Intron Coordinates:
5990 - 10897
Intron Length:
4908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84
0.76
0.8
77.4
36
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029606
Chromosome:
PEDO01021190.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018394
5149 - 13693
8545