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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021200.1_783_867_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
783 - 867
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
ATTTGTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCGAT
U12 Branch Point Sequence:
GAGCCCCGATTT
Flanking Amino Acid:
DDIVHPAESSEVDWEVELAA
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
60.2
39.4
Major BPS
47.5
-0.1
1.3
43.7
39.4
Major PPT
75.7
0.58
0.9
66.7
40
Minor 5ss
29.4
-2.4
3
31.4
35.2
Minor BPS
41.2
-0.5
1.9
53.55
41.2

Associated Gene:

Gene:
FAHD2A
Ensembl Gene ID:
ENSAPLG00000023945
Chromosome:
PEDO01021200.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044625
21 - 1869
1849
ENSAPLT00000031556
21 - 1869
1849
ENSAPLT00000026137
21 - 1869
1849