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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021207.1_834_1337_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
834 - 1337
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGACCC
5'SS Class:
major
3'SS Sequence:
TCTGTCCGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTCCAT
U12 Branch Point Sequence:
CACCCATCCACC
Flanking Amino Acid:
SNRQCCIADLGLAVMHSQGS
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
59.5
39.8
Major BPS
62.1
0.3
1.4
72.5
43.5
Major PPT
69.8
0.45
1
61.6
40
Minor 5ss
27.3
-2.6
2.9
27
35.8
Minor BPS
40.6
-0.7
2.1
46.46
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026915
Chromosome:
PEDO01021207.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022021
207 - 1615
1409