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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021212.1_939_1029_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
939 - 1029
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCTGCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
TGCCCCACATCC
Flanking Amino Acid:
EEELPPMELPELTVSPEIIT
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
68
0.41
0.8
60.3
29.7
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
43.3
-0.5
2
54.27
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022994
Chromosome:
PEDO01021212.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026734
21 - 2651
2631