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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021246.1_1489_1653_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1489 - 1653
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGC
5'SS Class:
strong_major
3'SS Sequence:
TTCAAAATCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTCAAAATC
Flanking Amino Acid:
QIDTQRRPAQSVNRGGMTRN
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
63.9
42.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
66.5
0.37
1
59.1
40.3
Minor 5ss
25.7
-2.8
3.1
32.8
42.2
Minor BPS
56.9
0.2
1.9
74.53
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014745
Chromosome:
PEDO01021246.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039036
182 - 4304
4123
ENSAPLT00000034634
911 - 4304
3394
ENSAPLT00000018819
911 - 4304
3394
ENSAPLT00000015365
452 - 4275
3824