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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021246.1_1718_1812_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1718 - 1812
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGCTCCCAAGCT
Flanking Amino Acid:
MKQYNGVPLDGRPMNIQLVT
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
64.1
41.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
80.1
0.68
0.8
72.8
37.5
Minor 5ss
29.2
-2.4
2.7
30.6
36.2
Minor BPS
46.8
-0.1
2.2
69.43
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014745
Chromosome:
PEDO01021246.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034634
911 - 4304
3394
ENSAPLT00000018819
911 - 4304
3394
ENSAPLT00000015365
452 - 4275
3824
ENSAPLT00000039036
182 - 4304
4123