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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021255.1_820_934_F

Intron Information:

Intron Rank:
133563
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
820 - 934
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGCCACCA
5'SS Class:
weak_major
3'SS Sequence:
GCCACCAACCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACATCAA
U12 Branch Point Sequence:
ATGACATCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.6
0.04
1.2
46.2
38
Major BPS
57.7
0.19
1.1
60
36
Major PPT
54.1
0.09
1
43.4
36.3
Minor 5ss
33
-1.9
3.3
39.7
40
Minor BPS
50.1
-0
1.9
63.61
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021839
Chromosome:
PEDO01021255.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026872
21 - 1388
1368