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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021255.1_980_1086_F

Intron Information:

Intron Rank:
133564
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
980 - 1086
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
TGG|GTGCCACGA
5'SS Class:
weak_major
3'SS Sequence:
CCACCACCCTTGG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACGTCAC
U12 Branch Point Sequence:
CCAACGTCACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.4
0.03
1.2
40.7
41.9
Major BPS
53.6
0.09
1.2
57
39.5
Major PPT
35.8
-0.8
3
47.3
29.6
Minor 5ss
29.9
-2.3
3.2
30.6
42.6
Minor BPS
38.5
-0.8
2.3
44.68
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021839
Chromosome:
PEDO01021255.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026872
21 - 1388
1368