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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021283.1_540_1046_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
540 - 1046
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCG
5'SS Class:
strong_major
3'SS Sequence:
TGCCCCTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATTTTTTTAACA
Flanking Amino Acid:
LNDYIEKEVKRAHQLPGQLS
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.3
37
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
78.8
0.65
0.8
72.5
32.2
Minor 5ss
40.6
-1.1
2.7
50.9
45.5
Minor BPS
81.8
1
0.9
85.09
27.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019852
Chromosome:
PEDO01021283.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030783
315 - 3490
3176