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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021294.1_2598_2751_R

Intron Information:

Intron Rank:
142356
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2598 - 2751
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATGCAGA
5'SS Class:
weak_major
3'SS Sequence:
TCTGTGCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TAGTCTTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.8
0.23
1.2
54.5
44.2
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
78.8
0.65
0.9
69.2
41.8
Minor 5ss
46.8
-0.3
2.6
57.5
46.9
Minor BPS
67
0.61
1.4
77.88
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023916
Chromosome:
PEDO01021294.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025465
2273 - 2860
588