Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021298.1_1865_1957_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1865 - 1957

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGCG

5'SS Class:

strong_major

3'SS Sequence:

GTCCCGTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTAAT

U12 Branch Point Sequence:

CGTGCTTAATTT

Flanking Amino Acid:

CQSSAGSRGVREFIEQHYVA

Intron Amino Acid Position:

228

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

66.5

39.1

Major BPS

69.2

0.48

1.3

71.9

Major PPT

67.9

0.4

0.9

60.9

35.1

Minor 5ss

24.1

-3

3.2

29.4

43.5

Minor BPS

44.8

-0.3

1.9

59.38

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022908

Chromosome:

PEDO01021298.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032968

1182 - 3092

1911

ENSAPLT00000031622

1182 - 3092

1911