Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021319.1_1133_1271_F

Intron Information:

Intron Rank:

146720

Intron Class:

major

Intron Phase:

Intron Coordinates:

1133 - 1271

Intron Length:

139

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAACTCC

5'SS Class:

major

3'SS Sequence:

TCTTATTGCCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

GTTCTCTTATTG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.7

0.35

1.3

40.2

Major BPS

79.1

0.72

69.3

38.4

Major PPT

71.5

0.48

0.9

65.4

40.8

Minor 5ss

39.9

-1.1

2.9

51.9

44.9

Minor BPS

55.4

0.03

1.7

61.13

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029049

Chromosome:

PEDO01021319.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037143

407 - 2071

1665

ENSAPLT00000036955

21 - 2071

2051

ENSAPLT00000037305

21 - 2071

2051