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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021319.1_195_575_F

Intron Information:

Intron Rank:
146724
Intron Class:
major
Intron Phase:
Intron Coordinates:
195 - 575
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAAATCC
5'SS Class:
major
3'SS Sequence:
GTTTCTCTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGTAC
U12 Branch Point Sequence:
TTGTCTGTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.3
62.8
36.8
Major BPS
49.6
-0
1.4
51.3
43.9
Major PPT
71.9
0.49
1
66.3
40.7
Minor 5ss
34
-1.8
3
43.5
43.7
Minor BPS
49.7
0.06
2.2
74.76
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029049
Chromosome:
PEDO01021319.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039503
21 - 2071
2051
ENSAPLT00000036955
21 - 2071
2051