Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021387.1_1106_1795_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1106 - 1795

Intron Length:

690

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGCACG

5'SS Class:

major

3'SS Sequence:

TCTCCTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTGAG

U12 Branch Point Sequence:

CCCTCCTTGAGC

Flanking Amino Acid:

PGDTAAAAQPGKLRSPFLQR

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

62.3

43.9

Major BPS

-0

1.6

48.7

45.1

Major PPT

88.4

0.86

0.7

83.7

24.3

Minor 5ss

32.9

-2

3.1

39.9

45.9

Minor BPS

57.4

0.22

1.7

60.95

45.2

Associated Gene:

Gene:

DBNL

Ensembl Gene ID:

ENSAPLG00000020566

Chromosome:

PEDO01021387.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042904

21 - 4105

4085