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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021387.1_3073_3357_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3073 - 3357
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACGGGCT
5'SS Class:
major
3'SS Sequence:
CGTCTCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGTTCCTCACTC
Flanking Amino Acid:
CARALYDYQAADDTEISFDP
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
62.9
40.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
76.7
0.6
0.8
69.7
31
Minor 5ss
30.3
-2.2
3.7
38.8
46.5
Minor BPS
58.7
0.25
1.8
71.43
40

Associated Gene:

Gene:
DBNL
Ensembl Gene ID:
ENSAPLG00000020566
Chromosome:
PEDO01021387.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042904
21 - 4105
4085