Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021387.1_5323_5402_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5323 - 5402

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGCACA

5'SS Class:

major

3'SS Sequence:

CCCCGTCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCCAC

U12 Branch Point Sequence:

CCGTGCCCACCG

Flanking Amino Acid:

ARMGYSPRTQVEILPQGRET

Intron Amino Acid Position:

390

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

67.6

39.4

Major BPS

48.9

-0

1.3

58.1

40.4

Major PPT

67.4

0.39

0.8

60.5

29.4

Minor 5ss

32.8

-2

3.1

40.2

45.7

Minor BPS

34.9

-1.2

2.2

35.38

45.8

Associated Gene:

Gene:

CAPG

Ensembl Gene ID:

ENSAPLG00000017764

Chromosome:

PEDO01021387.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017585

4779 - 8811

4033