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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021387.1_900_1002_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
900 - 1002
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGCATT
5'SS Class:
major
3'SS Sequence:
GGTTCCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
CCCTGCTTAACC
Flanking Amino Acid:
RRSESVEKAQEAASLIAQRA
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
78
38.3
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
69.2
0.43
1
62.2
39.8
Minor 5ss
38.8
-1.3
3.3
57
47.3
Minor BPS
60.9
0.32
1.9
65.58
46.5

Associated Gene:

Gene:
DBNL
Ensembl Gene ID:
ENSAPLG00000020566
Chromosome:
PEDO01021387.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042904
21 - 4105
4085