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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021401.1_1706_1825_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1706 - 1825
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CCAGGTCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCGAT
U12 Branch Point Sequence:
CTCCTCTCGATG
Flanking Amino Acid:
TLGVCKYTVQPCPND*
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
61.2
0.28
1.4
60.4
45.8
Major PPT
63.8
0.31
1
53.3
41.3
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
46.1
-0.4
1.6
47.13
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024437
Chromosome:
PEDO01021401.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038835
176 - 1843
1668