About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021401.1_1706_1846_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1706 - 1846
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TAATGATTAGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
CCTGTCCTAATG
Flanking Amino Acid:
TLGVCKYTVQRH
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
76.8
0.67
1
66
40.9
Major PPT
54.2
0.09
1.2
54.6
43.6
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
47.4
-0.3
1.8
50.59
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024437
Chromosome:
PEDO01021401.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003003
176 - 1852
1677