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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021401.1_930_1557_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
930 - 1557
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
GCTCCTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CTATCCTGACCT
Flanking Amino Acid:
DGTLRLWDLTTGTTTRRFVG
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.2
83.9
30.3
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
71.9
0.49
0.8
65.4
30.4
Minor 5ss
42.1
-0.9
3
57.4
40.7
Minor BPS
60.6
0.41
1.8
77.76
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024437
Chromosome:
PEDO01021401.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038835
176 - 1843
1668
ENSAPLT00000033548
21 - 1833
1813
ENSAPLT00000003003
176 - 1852
1677