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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021418.1_487_688_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
487 - 688
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTGCGCGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
ACCCCACTGAGT
Flanking Amino Acid:
NLRGKAAGQERPSDDHFMQI
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
58.6
0.19
1
53.1
36.7
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
40.1
-0.7
2
52.81
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013394
Chromosome:
PEDO01021418.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013949
21 - 1413
1393