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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021418.1_838_923_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
838 - 923
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTCGAT
U12 Branch Point Sequence:
CCCCCGTCGATT
Flanking Amino Acid:
RRQTLVTIEKTYSLLLDVED
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
48.5
-0
1.4
47.5
46
Major PPT
75.2
0.57
0.8
69.4
31.3
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
41.2
-0.6
2.2
51.97
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013394
Chromosome:
PEDO01021418.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013949
21 - 1413
1393