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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021420.1_316_408_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
316 - 408
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCAAAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCAAAA
U12 Branch Point Sequence:
TTTCCCCCAAAA
Flanking Amino Acid:
SGAETIAQIKARIAALEAVA
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
47.3
-0.1
1
50.8
30.3
Major PPT
53.9
0.09
1
47.5
31.8
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
51.3
0.04
2
72.03
39

Associated Gene:

Gene:
FAU
Ensembl Gene ID:
ENSAPLG00000019382
Chromosome:
PEDO01021420.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008544
21 - 1053
1033
ENSAPLT00000031909
21 - 1432
1412