Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01021420.1_709_830_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

709 - 830

Intron Length:

122

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

CCAAAAAATGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

TTTTCCCCAAAA

Flanking Amino Acid:

AGKVRGQTPKVAKQEKKKKK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

80.5

33.9

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

53.5

0.08

1.1

44.6

39.9

Minor 5ss

31.4

-2.1

2.9

42.1

44.5

Minor BPS

58.9

0.28

78.36

37.5

Associated Gene:

Gene:

FAU

Ensembl Gene ID:

ENSAPLG00000019382

Chromosome:

PEDO01021420.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008544

21 - 1053

1033