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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10002312_10002941_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10002312 - 10002941
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
AAATACTGATAT
Flanking Amino Acid:
KMLEKCNVFQCLLNLCSLKN
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
79.9
0.67
0.7
72.6
32.1
Minor 5ss
29.1
-2.4
3.2
37.3
42.5
Minor BPS
44.7
-0.3
1.9
60.61
41.7

Associated Gene:

Gene:
RICTOR
Ensembl Gene ID:
ENSAPLG00000008632
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009005
9949711 - 10021868
72158
ENSAPLT00000004108
9948343 - 10021868
73526
ENSAPLT00000033935
9948343 - 10021868
73526
ENSAPLT00000021909
9948343 - 10021973
73631