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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10005346_10005792_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10005346 - 10005792
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTAATTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
DILDEACEDKANLHALIQMK
Intron Amino Acid Position:
781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76.8
0.6
0.9
75
39.4
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
RICTOR
Ensembl Gene ID:
ENSAPLG00000008632
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004108
9948343 - 10021868
73526
ENSAPLT00000033935
9948343 - 10021868
73526
ENSAPLT00000021909
9948343 - 10021973
73631
ENSAPLT00000009005
9949711 - 10021868
72158