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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10018715_10020443_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10018715 - 10020443
Intron Length:
1729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CCTGCTTGAACT
Flanking Amino Acid:
NKVNSSYTRTGVKSIPDDTP
Intron Amino Acid Position:
1551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
1
86.4
29.2
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
59.1
0.36
1.6
71.98
45.3

Associated Gene:

Gene:
RICTOR
Ensembl Gene ID:
ENSAPLG00000008632
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004108
9948343 - 10021868
73526