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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10019673_10020443_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10019673 - 10020443
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CCTGCTTGAACT
Flanking Amino Acid:
SSTKSTELVLGVKSIPDDTP
Intron Amino Acid Position:
1565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
59.1
0.36
1.6
71.98
45.3

Associated Gene:

Gene:
RICTOR
Ensembl Gene ID:
ENSAPLG00000008632
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033935
9948343 - 10021868
73526
ENSAPLT00000021909
9948343 - 10021973
73631
ENSAPLT00000009005
9949711 - 10021868
72158