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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10028753_10030112_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10028753 - 10030112
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTCATTGAATA
Flanking Amino Acid:
SKVLSFKEFKIGSEKVLKIS
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
79.6
0.67
0.8
74.4
30.8
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
56.8
0.21
1.6
70.85
34.9

Associated Gene:

Gene:
OSMR
Ensembl Gene ID:
ENSAPLG00000008272
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008613
10027926 - 10056287
28362