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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10036497_10037026_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10036497 - 10037026
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCTG
5'SS Class:
major
3'SS Sequence:
GTATTTATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATTC
Flanking Amino Acid:
KAQTIRTKEAAPSGKVDIWR
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.3
46
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.2
0.66
0.9
70.5
44.2
Minor 5ss
47.6
-0.2
2.8
64.4
47
Minor BPS
54.4
0.12
1.8
66.71
39.6

Associated Gene:

Gene:
OSMR
Ensembl Gene ID:
ENSAPLG00000008272
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008613
10027926 - 10056287
28362