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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10037187_10038429_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10037187 - 10038429
Intron Length:
1243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TGTTGCTTATGA
Flanking Amino Acid:
VFQPNGKAELYNGSDTQLHH
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
71.3
33.5
Major BPS
75.5
0.63
1
66
40.9
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
39
-1.2
2.8
45.4
44
Minor BPS
49.1
-0
2.3
67.76
44.7

Associated Gene:

Gene:
OSMR
Ensembl Gene ID:
ENSAPLG00000008272
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008613
10027926 - 10056287
28362