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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10038567_10039632_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10038567 - 10039632
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGCCA
5'SS Class:
major
3'SS Sequence:
TTTCCATTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
CAAGCTCTAACA
Flanking Amino Acid:
ATEAFDVTHRIYPLPPFQLW
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
66
39.6
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
76.8
0.6
1
73.5
35.9
Minor 5ss
32.7
-2
3.3
40.2
39.6
Minor BPS
49.1
-0
1.8
57.82
41.6

Associated Gene:

Gene:
OSMR
Ensembl Gene ID:
ENSAPLG00000008272
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008613
10027926 - 10056287
28362