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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10130243_10134996_F

Intron Information:

Intron Rank:
139613
Intron Class:
major
Intron Phase:
Intron Coordinates:
10130243 - 10134996
Intron Length:
4754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTGCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
89.7
0.89
0.7
84
31
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
67.1
0.53
2.1
83.52
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025047
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037732
10125063 - 10136201
11139