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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_10181377_10182787_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10181377 - 10182787
Intron Length:
1411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GAAAACTTTATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AAAACTTTATAG
Flanking Amino Acid:
RKETMEKVTEVTYYSKLTHE
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.2
36.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
59.6
0.22
1
50.7
43
Minor 5ss
38.6
-1.3
3
52.1
38.3
Minor BPS
45.8
-0.4
1.7
46.22
39.8

Associated Gene:

Gene:
LIFR
Ensembl Gene ID:
ENSAPLG00000007351
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007714
10176479 - 10204145
27667